Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs936173 chr3:46918475 A/C 1.6E-6 174 8.02 17.2 22.97 KM Plot
UCEC rs941193 chr12:49321518 C/T 9.3E-6 170 11.37 22.97 22.75 KM Plot
UCEC rs9420407 chr10:88721035 A/G 0.00011 174 18.6 23.47 22.9 KM Plot
UCEC rs9469956 chr6:35148575 T/C 0.000126 172 22.85 14.9 35.43 KM Plot
UCEC rs9603329 chr13:38731531 A/G 2.87E-6 169 21.55 23.38 18 KM Plot
UCEC rs9616772 chr22:50290441 G/A 3.41E-5 170 22.8 21.02 10.33 KM Plot
UCEC rs9616775 chr22:50290856 C/T 4.42E-9 171 22.9 21.1 14.63 KM Plot
UCEC rs9616779 chr22:50292545 C/T 4.11E-9 173 22.8 20.93 14.63 KM Plot
UCEC rs9683679 chr4:57278315 A/T 0.000102 174 33.28 22.57 20.17 KM Plot
UCEC rs9684298 chr4:57278167 A/G 0.000131 174 20.17 22.57 30.12 KM Plot
UCEC rs97509 chr13:30684476 A/G 7.22E-5 174 17.3 22.9 22.75 KM Plot
UCEC rs9799865 chr4:57197916 G/T 4.48E-5 173 28.68 22.57 17.87 KM Plot
UCEC rs9864 chr10:88722398 A/T 5.42E-7 166 22.67 21.07 17.3 KM Plot
UCEC rs9904031 chr17:27060545 A/G 7.73E-9 171 21.08 26.7 11.53 KM Plot
UCEC rs9911086 chr17:27061586 C/T 7.73E-9 171 21.08 26.7 11.53 KM Plot